Related genomes of genome BIFDB based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BIFDB - Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)

Proteome version: 25-MAY-2010 (Rel. 121, Last updated, Version 3) with 2119 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BIFAA	Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)	1157
2	BIFLD	Bifidobacterium longum (strain DJO10A)	1120
3	BIFLS	Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)	1113
4	BIFL1	Bifidobacterium longum subsp. infantis (strain 157F)	1113
5	BIFLJ	Bifidobacterium longum subsp. longum (strain JDM301)	1112
6	BIFLM	Bifidobacterium longum subsp. longum (strain BBMN68)	1094
7	BIFL2	Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b)	1093
8	BIFBA	Bifidobacterium breve (strain ACS-071-V-Sch8b)	1090
9	BIFLO	Bifidobacterium longum (strain NCC 2705)	1087
10	BIFAV	Bifidobacterium animalis subsp. lactis (strain V9)	1028

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	11
2	TRYCI	Trypanosoma congolense (strain IL3000)	11
3	ENTBH	Enterocytozoon bieneusi (strain H348)	16
4	EDHAE	Edhazardia aedis (strain USNM 41457)	18
5	TRAHO	Trachipleistophora hominis	18
6	VITCO	Vittaforma corneae (strain ATCC 50505)	19
7	MEGSC	Megaselia scalaris	20
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	20
9	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	20
10	NEMP3	Nematocida parisii (strain ERTm3)	22