Related genomes of genome BUCAF based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BUCAF - Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF99)

Proteome version: 16-MAY-2014 (Rel. 120, Last updated, Version 4) with 590 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BUCAI	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)	533
2	BUCA0	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain LL01)	533
3	BUCA5	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)	533
4	BUCAT	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)	531
5	CROTZ	Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)	471
6	ECO81	Escherichia coli O81 (strain ED1a)	470
7	ECO27	Escherichia coli O127:H6 (strain E2348/69 / EPEC)	470
8	SERSA	Serratia plymuthica (strain AS9)	469
9	ECOLU	Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)	469
10	SERP5	Serratia proteamaculans (strain 568)	469

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	11
2	VITCO	Vittaforma corneae (strain ATCC 50505)	12
3	TRAHO	Trachipleistophora hominis	13
4	ENTBH	Enterocytozoon bieneusi (strain H348)	13
5	EDHAE	Edhazardia aedis (strain USNM 41457)	14
6	MEGSC	Megaselia scalaris	16
7	RALSL	Ralstonia solanacearum	17
8	NOSCE	Nosema ceranae (strain BRL01)	18
9	SPRLO	Spraguea lophii (strain 42_110)	18
10	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	19