Related genomes of genome CALAS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CALAS - Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1)

Proteome version: 29-MAR-2012 (Rel. 112, Last updated, Version 1) with 4095 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ROSS1	Roseiflexus sp. (strain RS-1)	1170
2	ROSCS	Roseiflexus castenholzii (strain DSM 13941 / HLO8)	1167
3	CHLAA	Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)	1163
4	CHLSY	Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)	1158
5	CHLAD	Chloroflexus aggregans (strain MD-66 / DSM 9485)	1081
6	ANATU	Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1)	977
7	KTERU	Ktedonosporobacter rubrisoli	950
8	HERA2	Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95)	904
9	STRLN	Streptomyces lincolnensis	836
10	UC182	Candidatus Vecturithrix granuli none	835

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	16
2	TRYCI	Trypanosoma congolense (strain IL3000)	18
3	TRAHO	Trachipleistophora hominis	26
4	VITCO	Vittaforma corneae (strain ATCC 50505)	26
5	EDHAE	Edhazardia aedis (strain USNM 41457)	28
6	NEMP3	Nematocida parisii (strain ERTm3)	29
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	30
8	VAVCU	Vavraia culicis (isolate floridensis)	30
9	SPRLO	Spraguea lophii (strain 42_110)	31
10	EIMAC	Eimeria acervulina	33