Related genomes of genome CARTR based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CARTR - Carboxydocella thermautotrophica

Proteome version: Refseq; ASM305449v1; GCA_003054495.1; 17-APR-2018 with 2725 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	THEPJ	Thermincola potens (strain JR)	1263
2	CARHZ	Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)	1131
3	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	1125
4	THEFR	Thermanaerosceptrum fracticalcis	1100
5	DESRL	Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIMB 8452 / DL)	1096
6	DESAJ	Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4)	1081
7	DESHD	Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)	1079
8	DESHY	Desulfitobacterium hafniense (strain Y51)	1079
9	DESCC	Desulfotomaculum nigrificans (strain DSM 14880 / VKM B-2319 / CO-1-SRB)	1076
10	DESK7	Desulfofundulus kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)	1072

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	14
2	ENTBH	Enterocytozoon bieneusi (strain H348)	15
3	TRAHO	Trachipleistophora hominis	15
4	EDHAE	Edhazardia aedis (strain USNM 41457)	16
5	TRYCI	Trypanosoma congolense (strain IL3000)	20
6	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	21
7	NEMP3	Nematocida parisii (strain ERTm3)	22
8	VAVCU	Vavraia culicis (isolate floridensis)	22
9	NOSCE	Nosema ceranae (strain BRL01)	22
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24