Related genomes of genome CITK8 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CITK8 - Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

Proteome version: 15-JAN-2008 (Rel. 85, Last updated, Version 2) with 5017 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ECOLU	Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)	3098
2	ECOUT	Escherichia coli (strain UTI89 / UPEC)	3052
3	KLEOK	Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686 / BUCSAV 143 / CCM 1901)	3048
4	ECOL6	Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)	3041
5	CITRI	Citrobacter rodentium (strain ICC168)	3038
6	ECOAB	Escherichia coli OR:K5:H- (strain ABU 83972)	3037
7	ECOC1	Escherichia coli (strain 'clone D i14')	3034
8	ECOC2	Escherichia coli (strain 'clone D i2')	3034
9	ECOSM	Escherichia coli (strain SMS-3-5 / SECEC)	3031
10	ECO44	Escherichia coli O44:H18 (strain 042 / EAEC)	3028

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	25
2	ENTBH	Enterocytozoon bieneusi (strain H348)	26
3	EDHAE	Edhazardia aedis (strain USNM 41457)	27
4	TRAHO	Trachipleistophora hominis	30
5	NEMP3	Nematocida parisii (strain ERTm3)	35
6	NOSCE	Nosema ceranae (strain BRL01)	36
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	37
8	TRYCI	Trypanosoma congolense (strain IL3000)	38
9	SPRLO	Spraguea lophii (strain 42_110)	38
10	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	39