Related genomes of genome CITRI based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CITRI - Citrobacter rodentium (strain ICC168)

Proteome version: 10-AUG-2010 (Rel. 124, Last updated, Version 6) with 4961 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ECO26	Escherichia coli O26:H11 (strain 11368 / EHEC)	3130
2	ECOCB	Escherichia coli O55:H7 (strain CB9615 / EPEC)	3094
3	ECO10	Escherichia coli O103:H2 (strain 12009 / EHEC)	3093
4	ECO1A	Escherichia coli O111:H- (strain 11128 / EHEC)	3088
5	ECOLU	Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)	3085
6	SALT4	Salmonella typhimurium (strain 4/74)	3081
7	ECO5T	Escherichia coli O157:H7 (strain TW14359 / EHEC)	3074
8	ECO57	Escherichia coli O157:H7 str. EDL933	3072
9	SALT1	Salmonella typhimurium (strain 14028s / SGSC 2262)	3069
10	SALTS	Salmonella typhimurium (strain SL1344)	3069

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	27
2	VITCO	Vittaforma corneae (strain ATCC 50505)	28
3	EDHAE	Edhazardia aedis (strain USNM 41457)	28
4	TRAHO	Trachipleistophora hominis	32
5	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	34
6	NEMP3	Nematocida parisii (strain ERTm3)	36
7	TRYCI	Trypanosoma congolense (strain IL3000)	37
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	37
9	NOSCE	Nosema ceranae (strain BRL01)	37
10	SPRLO	Spraguea lophii (strain 42_110)	39