Related genomes of genome CLOLD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CLOLD - Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC)

Proteome version: 28-JUL-2010 (Rel. 105, Last updated, Version 2) with 4149 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CLOK5	Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)	1820
2	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	1703
3	CLOBJ	Clostridium botulinum (strain Kyoto / Type A2)	1648
4	CLOBL	Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)	1635
5	CLOBM	Clostridium botulinum (strain Loch Maree / Type A3)	1632
6	CLOBK	Clostridium botulinum (strain Okra / Type B1)	1630
7	CLOBH	Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)	1627
8	CLOAE	Clostridium acetobutylicum (strain EA 2018)	1621
9	CLOAB	Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)	1614
10	CLOB6	Clostridium botulinum (strain 657 / Type Ba4)	1613

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EDHAE	Edhazardia aedis (strain USNM 41457)	19
2	ENTBH	Enterocytozoon bieneusi (strain H348)	20
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	21
4	VITCO	Vittaforma corneae (strain ATCC 50505)	22
5	TRAHO	Trachipleistophora hominis	22
6	TRYCI	Trypanosoma congolense (strain IL3000)	23
7	NEMP3	Nematocida parisii (strain ERTm3)	26
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	28
9	SPRLO	Spraguea lophii (strain 42_110)	29
10	NOSCE	Nosema ceranae (strain BRL01)	29