Related genomes of genome CLOSS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CLOSS - Clostridium sp. (strain SY8519)

Proteome version: 22-SEP-2011 (Rel. 110, Last updated, Version 2) with 2598 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LACSW	Lacrimispora saccharolytica (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1)	943
2	AGARV	Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)	912
3	ROSHA	Roseburia hominis (strain DSM 16839 / JCM 17582 / NCIMB 14029 / A2-183)	902
4	LACP7	Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)	848
5	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	844
6	ANAHA	Anaerostipes hadrus	831
7	LACE2	Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4)	814
8	DESHY	Desulfitobacterium hafniense (strain Y51)	780
9	BUTPB	Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316)	773
10	CLOLD	Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC)	773

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	20
2	ENTBH	Enterocytozoon bieneusi (strain H348)	22
3	VITCO	Vittaforma corneae (strain ATCC 50505)	22
4	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	23
5	EDHAE	Edhazardia aedis (strain USNM 41457)	23
6	MEGSC	Megaselia scalaris	25
7	TRAHO	Trachipleistophora hominis	26
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	26
9	NEMP3	Nematocida parisii (strain ERTm3)	27
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	27