Related genomes of genome CROAH based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CROAH - Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090)

Proteome version: 07-SEP-2010 (Rel. 106, Last updated, Version 2) with 2701 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LACS5	Lacinutrix sp. (strain 5H-3-7-4)	1743
2	DOKS4	Dokdonia sp. (strain 4H-3-7-5)	1740
3	GRAFK	Gramella forsetii (strain KT0803)	1697
4	LEEBM	Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217)	1675
5	AEQSU	Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3)	1652
6	NONDD	Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6)	1627
7	CELAD	Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630)	1614
8	ZUNPS	Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)	1609
9	CELLC	Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)	1580
10	ZOBGA	Zobellia galactanivorans (strain DSM 12802 / CCUG 47099 / CIP 106680 / NCIMB 13871 / Dsij)	1568

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	20
2	EDHAE	Edhazardia aedis (strain USNM 41457)	23
3	VITCO	Vittaforma corneae (strain ATCC 50505)	23
4	TRYCI	Trypanosoma congolense (strain IL3000)	23
5	TRAHO	Trachipleistophora hominis	25
6	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	27
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	28
8	NEMP3	Nematocida parisii (strain ERTm3)	29
9	VAVCU	Vavraia culicis (isolate floridensis)	30
10	SPRLO	Spraguea lophii (strain 42_110)	30