Related genomes of genome DESCC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

DESCC - Desulfotomaculum nigrificans (strain DSM 14880 / VKM B-2319 / CO-1-SRB)

Proteome version: 14-OCT-2011 (Rel. 110, Last updated, Version 2) with 2620 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESRL	Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIMB 8452 / DL)	1726
2	DESRM	Desulfotomaculum reducens (strain MI-1)	1695
3	DESK7	Desulfofundulus kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)	1280
4	DESAS	Desulfofarcimen acetoxidans (strain ATCC 49208 / DSM 771 / KCTC 5769 / VKM B-1644 / 5575)	1226
5	THEFR	Thermanaerosceptrum fracticalcis	1208
6	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	1204
7	PELTS	Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)	1159
8	THEPJ	Thermincola potens (strain JR)	1139
9	DESAJ	Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4)	1122
10	DESMD	Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / KCTC 12902 / NCIMB 13706 / S10)	1119

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EDHAE	Edhazardia aedis (strain USNM 41457)	17
2	TRAHO	Trachipleistophora hominis	17
3	TRYCI	Trypanosoma congolense (strain IL3000)	18
4	ENTBH	Enterocytozoon bieneusi (strain H348)	19
5	VITCO	Vittaforma corneae (strain ATCC 50505)	21
6	NEMP3	Nematocida parisii (strain ERTm3)	21
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	23
8	NOSCE	Nosema ceranae (strain BRL01)	24
9	VAVCU	Vavraia culicis (isolate floridensis)	26
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	26