Related genomes of genome DESPS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

DESPS - Desulfotalea psychrophila (strain LSv54 / DSM 12343)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 101) with 3236 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESSD	Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1)	1211
2	DESPD	Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / VKM B-1956 / 1pr3)	1103
3	DESAH	Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2)	1043
4	MARSD	Maridesulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIMB 8403 / VKM B-1763)	922
5	DESTT	Desulfobacula toluolica (strain DSM 7467 / Tol2)	910
6	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	888
7	DESAL	Desulfatibacillum aliphaticivorans	887
8	DESBD	Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378 / X)	884
9	DESAT	Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2)	866
10	PSEP2	Pseudodesulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30)	809

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	10
2	TRAHO	Trachipleistophora hominis	16
3	VITCO	Vittaforma corneae (strain ATCC 50505)	19
4	TRYCI	Trypanosoma congolense (strain IL3000)	19
5	SPRLO	Spraguea lophii (strain 42_110)	20
6	NOSCE	Nosema ceranae (strain BRL01)	20
7	EDHAE	Edhazardia aedis (strain USNM 41457)	21
8	VAVCU	Vavraia culicis (isolate floridensis)	24
9	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	25
10	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	26