Related genomes of genome ECOKO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ECOKO - Escherichia coli (strain ATCC 55124 / KO11FL)

Proteome version: 23-NOV-2011 (Rel. 110, Last updated, Version 3) with 4634 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ECOLW	Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)	4516
2	ECOSE	Escherichia coli (strain SE11)	4071
3	ECO26	Escherichia coli O26:H11 (strain 11368 / EHEC)	3967
4	ECO8A	Escherichia coli O8 (strain IAI1)	3913
5	ECO10	Escherichia coli O103:H2 (strain 12009 / EHEC)	3891
6	ECO55	Escherichia coli (strain 55989 / EAEC)	3890
7	ECO1A	Escherichia coli O111:H- (strain 11128 / EHEC)	3884
8	ECO1E	Escherichia coli O104:H4 (strain 2009EL-2071)	3883
9	ECO24	Escherichia coli O139:H28 (strain E24377A / ETEC)	3861
10	ECOLC	Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)	3800

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	26
2	VITCO	Vittaforma corneae (strain ATCC 50505)	27
3	EDHAE	Edhazardia aedis (strain USNM 41457)	28
4	TRAHO	Trachipleistophora hominis	30
5	NEMP3	Nematocida parisii (strain ERTm3)	36
6	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	36
7	SPRLO	Spraguea lophii (strain 42_110)	37
8	NOSCE	Nosema ceranae (strain BRL01)	37
9	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	39
10	TRYCI	Trypanosoma congolense (strain IL3000)	39