Related genomes of genome FLABF based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FLABF - Flavobacterium branchiophilum (strain FL-15)

Proteome version: 28-OCT-2011 (Rel. 110, Last updated, Version 2) with 2848 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FLAJ1	Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101)	1568
2	FLASC	Flavobacterium sp. (strain CF136)	1539
3	FLAFP	Flavobacterium frigoris (strain PS1)	1489
4	FLAIG	Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9)	1423
5	FLAPJ	Flavobacterium psychrophilum (strain ATCC 49511 / DSM 21280 / CIP 103535 / JIP02/86)	1390
6	FLACA	Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87)	1364
7	CELAD	Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630)	1316
8	DOKS4	Dokdonia sp. (strain 4H-3-7-5)	1310
9	LEEBM	Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217)	1292
10	CELLC	Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)	1275

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	20
2	VITCO	Vittaforma corneae (strain ATCC 50505)	22
3	TRYCI	Trypanosoma congolense (strain IL3000)	24
4	EDHAE	Edhazardia aedis (strain USNM 41457)	24
5	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	25
6	TRAHO	Trachipleistophora hominis	27
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	28
8	NEMP3	Nematocida parisii (strain ERTm3)	29
9	MEGSC	Megaselia scalaris	30
10	NOSCE	Nosema ceranae (strain BRL01)	31