Related genomes of genome FLAIG based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FLAIG - Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9)

Proteome version: 21-MAY-2012 (Rel. 112, Last updated, Version 2) with 2648 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FLAJ1	Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101)	1584
2	FLASC	Flavobacterium sp. (strain CF136)	1532
3	FLAFP	Flavobacterium frigoris (strain PS1)	1505
4	FLAPJ	Flavobacterium psychrophilum (strain ATCC 49511 / DSM 21280 / CIP 103535 / JIP02/86)	1448
5	FLACA	Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87)	1431
6	FLABF	Flavobacterium branchiophilum (strain FL-15)	1423
7	DOKS4	Dokdonia sp. (strain 4H-3-7-5)	1359
8	LACS5	Lacinutrix sp. (strain 5H-3-7-4)	1355
9	LEEBM	Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217)	1333
10	CELAD	Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630)	1322

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	17
2	EDHAE	Edhazardia aedis (strain USNM 41457)	22
3	TRYCI	Trypanosoma congolense (strain IL3000)	23
4	VITCO	Vittaforma corneae (strain ATCC 50505)	23
5	TRAHO	Trachipleistophora hominis	24
6	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	25
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	26
8	MEGSC	Megaselia scalaris	27
9	VAVCU	Vavraia culicis (isolate floridensis)	27
10	NEMP3	Nematocida parisii (strain ERTm3)	27