Related genomes of genome GEOS4 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

GEOS4 - Geobacillus sp. (strain Y412MC10)

Proteome version: 10-FEB-2010 (Rel. 103, Last updated, Version 1) with 6237 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PAESJ	Paenibacillus sp. (strain JDR-2)	2983
2	PAEMK	Paenibacillus mucilaginosus (strain KNP414)	2857
3	PAETH	Paenibacillus terrae (strain HPL-003)	2513
4	PAEPS	Paenibacillus polymyxa (strain SC2)	2499
5	PAEP6	Paenibacillus polymyxa (strain E681)	2427
6	BREBN	Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)	2054
7	THECK	Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4)	2006
8	NIACI	Niallia circulans	1873
9	BACCZ	Bacillus cereus (strain ZK / E33L)	1823
10	PRIM1	Priestia megaterium (strain ATCC 12872 / QMB1551)	1800

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	23
2	TRAHO	Trachipleistophora hominis	23
3	EDHAE	Edhazardia aedis (strain USNM 41457)	23
4	ENTBH	Enterocytozoon bieneusi (strain H348)	24
5	NEMP3	Nematocida parisii (strain ERTm3)	29
6	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	31
7	TRYCI	Trypanosoma congolense (strain IL3000)	31
8	VAVCU	Vavraia culicis (isolate floridensis)	32
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	34
10	SPRLO	Spraguea lophii (strain 42_110)	34