Related genomes of genome HALHG based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HALHG - Halanaerobium hydrogeniformans

Proteome version: 18-JUL-2013 (Rel. 117, Last updated, Version 3) with 2249 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	HALPG	Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL)	1101
2	HALOH	Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)	881
3	HALHC	Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1)	847
4	ALKMQ	Alkaliphilus metalliredigens (strain QYMF)	819
5	ACEAZ	Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288)	803
6	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	779
7	HYDET	Hydrogenispora ethanolica	775
8	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	774
9	THEFR	Thermanaerosceptrum fracticalcis	762
10	DESHY	Desulfitobacterium hafniense (strain Y51)	761

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	15
2	VITCO	Vittaforma corneae (strain ATCC 50505)	18
3	TRAHO	Trachipleistophora hominis	19
4	EDHAE	Edhazardia aedis (strain USNM 41457)	20
5	TRYCI	Trypanosoma congolense (strain IL3000)	23
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	25
7	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	26
8	NEMP3	Nematocida parisii (strain ERTm3)	27
9	SPRLO	Spraguea lophii (strain 42_110)	27
10	MEGSC	Megaselia scalaris	27