Related genomes of genome HALO1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HALO1 - Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)

Proteome version: 15-MAY-2014 (Rel. 120, Last updated, Version 6) with 6683 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SORC5	Sorangium cellulosum (strain So ce56)	1588
2	STIAD	Stigmatella aurantiaca (strain DW4/3-1)	1586
3	CORCM	Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2)	1480
4	MYXSD	Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8)	1444
5	MYXXD	Myxococcus xanthus (strain DK1622)	1428
6	MYXFH	Myxococcus fulvus (strain ATCC BAA-855 / HW-1)	1408
7	U10DE	Deltaproteobacteria bacterium Fred_18-Q3-R57-64_BATAC.308	1073
8	U08DE	Deltaproteobacteria bacterium NP119	1069
9	PERCE	Persicimonas caeni	1069
10	ANASK	Anaeromyxobacter sp. (strain K)	1022

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	19
2	EDHAE	Edhazardia aedis (strain USNM 41457)	21
3	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	24
4	TRYCI	Trypanosoma congolense (strain IL3000)	24
5	TRAHO	Trachipleistophora hominis	25
6	VITCO	Vittaforma corneae (strain ATCC 50505)	26
7	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	28
8	NOSCE	Nosema ceranae (strain BRL01)	29
9	NEMP3	Nematocida parisii (strain ERTm3)	29
10	SPRLO	Spraguea lophii (strain 42_110)	31