Related genomes of genome LUTPR based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LUTPR - Luteitalea pratensis

Proteome version: Refseq; ASM161886v1; GCA_001618865.1; 30-MAY-2018 with 6200 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SOLUE	Solibacter usitatus (strain Ellin6076)	1666
2	KORVE	Koribacter versatilis (strain Ellin345)	1131
3	TERRK	Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63)	983
4	TERSS	Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)	962
5	GRATM	Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9)	910
6	GRAMM	Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)	892
7	UC101	Acidobacteria bacterium s2_autometa_2-0	891
8	UC064	Holophagales bacterium EsbW_18-Q3-R4-48_BAT3C.4_cln	884
9	MYXSD	Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8)	869
10	CORCM	Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2)	845

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	14
2	ENTBH	Enterocytozoon bieneusi (strain H348)	15
3	EDHAE	Edhazardia aedis (strain USNM 41457)	18
4	VAVCU	Vavraia culicis (isolate floridensis)	19
5	TRAHO	Trachipleistophora hominis	19
6	NEMP3	Nematocida parisii (strain ERTm3)	19
7	SPRLO	Spraguea lophii (strain 42_110)	21
8	VITCO	Vittaforma corneae (strain ATCC 50505)	22
9	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	23
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24