Related genomes of genome MARPK based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MARPK - Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3)

Proteome version: 23-JUL-2013 (Rel. 117, Last updated, Version 3) with 2044 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PETMO	Petrotoga mobilis (strain DSM 10674 / SJ95)	957
2	THEAB	Thermosipho africanus (strain TCF52B)	911
3	THEM4	Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)	909
4	DEFTU	Defluviitoga tunisiensis	876
5	FERNB	Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)	843
6	FERPD	Fervidobacterium pennivorans (strain DSM 9078 / Ven5)	840
7	PSELT	Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO)	828
8	KOSOT	Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1)	811
9	THESQ	Thermotoga sp. (strain RQ2)	806
10	THEMA	Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)	797

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	14
2	VITCO	Vittaforma corneae (strain ATCC 50505)	14
3	EDHAE	Edhazardia aedis (strain USNM 41457)	16
4	TRYCI	Trypanosoma congolense (strain IL3000)	16
5	ENTBH	Enterocytozoon bieneusi (strain H348)	16
6	TRAHO	Trachipleistophora hominis	18
7	NEMP3	Nematocida parisii (strain ERTm3)	19
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	20
9	NOSCE	Nosema ceranae (strain BRL01)	23
10	NEMA1	Nematocida ausubeli (strain ATCC PRA-371 / ERTm2)	24