Related genomes of genome MEGSC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MEGSC - Megaselia scalaris

Proteome version: Ensembl Metazoa 23; Msca1; 21-AUG-2014 with 11428 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AEDAL	Aedes albopictus	1090
2	MUSDO	Musca domestica	1067
3	DROOB	Drosophila obscura	997
4	HERIL	Hermetia illucens	982
5	DROSZ	Drosophila suzukii	979
6	DROGR	Drosophila grimshawi	976
7	DROSE	Drosophila sechellia	963
8	DROYA	Drosophila yakuba	956
9	BACLA	Bactrocera latifrons	955
10	BACDO	Bactrocera dorsalis	952

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC073	Candidatus Andersenbacteria bacterium NC_groundwater_813_Pr1_B-0.1um_46_36	4
2	UC184	candidate division WWE3 bacterium RAAC2_WWE3_1	4
3	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	5
4	RALSL	Ralstonia solanacearum	5
5	SULMC	Sulcia muelleri (strain CARI)	5
6	UC066	Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26	5
7	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	6
8	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	7
9	UC116	Patescibacteria group bacterium E44_bin74	7
10	UC062	bacterium Kalu_18-Q3-R12-55_BAT3C.2_fly	7