Related genomes of genome METFS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

METFS - Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP)

Proteome version: 18-SEP-2014 (Rel. 122, Last updated, Version 3) with 2815 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	METB6	Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)	1503
2	METMJ	Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)	1313
3	METHJ	Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)	1302
4	METP4	Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847)	1292
5	METBM	Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2)	1279
6	METPE	Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)	1272
7	METAC	Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)	983
8	METMA	Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)	975
9	METLZ	Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)	953
10	METBF	Methanosarcina barkeri (strain Fusaro / DSM 804)	943

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	19
2	TRYCI	Trypanosoma congolense (strain IL3000)	20
3	MEGSC	Megaselia scalaris	28
4	RALSL	Ralstonia solanacearum	29
5	UC087	Candidatus Pacebacteria bacterium LF-bin-483	30
6	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	31
7	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	33
8	ZINIC	Zinderia insecticola (strain CARI)	35
9	MYCHA	Mycoplasma haemolamae (strain Purdue)	35
10	SULMC	Sulcia muelleri (strain CARI)	35