Related genomes of genome MONPE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MONPE - Moniliophthora perniciosa (strain FA553 / isolate CP02)

Proteome version: Ensembl Fungi 42; ASM18302v1 with 13559 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ARMGA	Armillaria gallica	927
2	ARMOS	Armillaria ostoyae	747
3	HYPSF	Hypholoma sublateritium (strain FD-334 SS-4)	729
4	GLOTR	Gloeophyllum trabeum - GLOTR	703
5	SERL3	Serpula lacrymans var. lacrymans (strain S7.3)	696
6	GLOTA	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	695
7	STEHR	Stereum hirsutum (strain FP-91666)	681
8	AURST	Auricularia subglabra (strain TFB-10046 / SS5)	657
9	PLEER	Pleurotus eryngii	636
10	PUNST	Punctularia strigosozonata (strain HHB-11173)	631

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	2
2	UC112	Candidatus Gracilibacteria bacterium 28_42_T64	3
3	UREU1	Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)	4
4	UC105	Patescibacteria group bacterium Baikal-deep-G193	4
5	MYCPN	Mycoplasma pneumoniae (strain ATCC 29342 / M129)	5
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	5
7	ARCG6	Archaeon GW2011_AR20	5
8	UREP2	Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)	5
9	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	5
10	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	5