Related genomes of genome MYCFM based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MYCFM - Mycoplasmopsis fermentans (strain M64)

Proteome version: 03-JUL-2011 (Rel. 109, Last updated, Version 2) with 954 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCFP	Mycoplasmopsis fermentans (strain ATCC 19989 / NBRC 14854 / NCTC 10117 / PG18)	788
2	MYCFJ	Mycoplasmopsis fermentans (strain JER)	698
3	MYCBG	Mycoplasmopsis bovis (strain ATCC 25523 / DSM 22781 / NCTC 10131 / PG45)	419
4	MYCBH	Mycoplasmopsis bovis (strain Hubei-1)	413
5	MYCCM	Mycoplasma crocodyli (strain ATCC 51981 / MP145)	398
6	MYCAP	Mycoplasmopsis agalactiae (strain NCTC 10123 / CIP 59.7 / PG2)	383
7	MYCC1	Mycoplasmopsis cynos (strain C142)	359
8	MYCPU	Mycoplasmopsis pulmonis (strain UAB CTIP)	342
9	MYCS5	Mycoplasmopsis synoviae (strain 53)	325
10	MYCHM	Mycoplasma hyorhinis (strain MCLD)	318

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	3
2	VITCO	Vittaforma corneae (strain ATCC 50505)	9
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	9
4	TRYCI	Trypanosoma congolense (strain IL3000)	10
5	EDHAE	Edhazardia aedis (strain USNM 41457)	11
6	NANGC	Nannochloropsis gaditana (strain CCMP526)	12
7	MEGSC	Megaselia scalaris	12
8	ENTBH	Enterocytozoon bieneusi (strain H348)	12
9	SYMMI	Symbiodinium microadriaticum	13
10	POSPM	Postia placenta (strain ATCC 44394 / Madison 698-R)	16