Related genomes of genome MYCSH based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MYCSH - Mycobacterium shimoidei

Proteome version: Ensembl Bacteria 41; ASM172244v1 with 4327 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCGO	Mycobacterium gordonae	3087
2	MYCIA	Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600)	3046
3	MYCAS	Mycobacterium asiaticum	2985
4	MYCRN	Mycolicibacterium rhodesiae (strain NBB3)	2893
5	MYCA1	Mycobacterium avium (strain 104)	2873
6	MYCMM	Mycobacterium marinum (strain ATCC BAA-535 / M)	2867
7	MYCKA	Mycobacterium kansasii	2826
8	MYCPA	Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)	2818
9	MYCSJ	Mycobacterium sp. (strain JLS)	2679
10	MYCSD	Mycolicibacter sinensis (strain JDM601)	2679

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	17
2	VITCO	Vittaforma corneae (strain ATCC 50505)	21
3	TRYCI	Trypanosoma congolense (strain IL3000)	27
4	TRAHO	Trachipleistophora hominis	27
5	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	28
6	EDHAE	Edhazardia aedis (strain USNM 41457)	28
7	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	28
8	SPRLO	Spraguea lophii (strain 42_110)	29
9	NOSCE	Nosema ceranae (strain BRL01)	30
10	NEMP3	Nematocida parisii (strain ERTm3)	31