Related genomes of genome NITHX based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

NITHX - Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)

Proteome version: 14-APR-2006 (Rel. 87, Last updated, Version 1) with 4226 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	NITWN	Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255)	2072
2	BRASB	Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)	2045
3	BRADU	Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)	2023
4	RHOPT	Rhodopseudomonas palustris (strain TIE-1)	1979
5	BRASO	Bradyrhizobium sp. (strain ORS 278)	1971
6	RHOP5	Rhodopseudomonas palustris (strain BisA53)	1935
7	AFIC4	Afipia carboxidovorans (strain OM4)	1915
8	RHOPS	Rhodopseudomonas palustris (strain BisB5)	1914
9	RHOPX	Rhodopseudomonas palustris (strain DX-1)	1909
10	AFIC5	Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)	1898

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	20
2	TRAHO	Trachipleistophora hominis	21
3	NEMP3	Nematocida parisii (strain ERTm3)	25
4	EDHAE	Edhazardia aedis (strain USNM 41457)	25
5	VITCO	Vittaforma corneae (strain ATCC 50505)	26
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	28
7	SPRLO	Spraguea lophii (strain 42_110)	28
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	30
9	VAVCU	Vavraia culicis (isolate floridensis)	30
10	NEMA1	Nematocida ausubeli (strain ATCC PRA-371 / ERTm2)	30