Related genomes of genome PEDPL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PEDPL - Pedosphaera parvula (strain Ellin514)

Proteome version: Ensembl Bacteria 41; ASM17255v1 with 6510 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	OPITP	Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)	1067
2	SINAD	Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)	1051
3	CORCM	Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2)	896
4	SOLUE	Solibacter usitatus (strain Ellin6076)	887
5	MYXSD	Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8)	880
6	MYXXD	Myxococcus xanthus (strain DK1622)	859
7	NIAKG	Niastella koreensis (strain DSM 17620 / KACC 11465 / NBRC 106392 / GR20-10)	855
8	PARPJ	Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)	848
9	PARP8	Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)	844
10	STIAD	Stigmatella aurantiaca (strain DW4/3-1)	841

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	23
2	VITCO	Vittaforma corneae (strain ATCC 50505)	23
3	TRYCI	Trypanosoma congolense (strain IL3000)	25
4	EDHAE	Edhazardia aedis (strain USNM 41457)	25
5	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	25
6	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	27
7	TRAHO	Trachipleistophora hominis	31
8	NEMP3	Nematocida parisii (strain ERTm3)	31
9	NANST	Nanobsidianus stetteri	32
10	SPRLO	Spraguea lophii (strain 42_110)	34