Related genomes of genome PONDE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PONDE - Pontiella desulfatans

Proteome version: Refseq; Pontiella desulfatans F1 draft genome; GCA_900890425.1; 23-AUG-2020 with 6493 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CORAD	Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24)	943
2	PEDPL	Pedosphaera parvula (strain Ellin514)	845
3	OPITP	Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)	821
4	SOLUE	Solibacter usitatus (strain Ellin6076)	777
5	UC079	Candidatus Hydrogenedens sp. RI_113	760
6	RHOBA	Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)	754
7	U02AM	Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17	751
8	RUBBR	Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)	749
9	KLEP3	Klebsiella pneumoniae (strain 342)	744
10	UC166	Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 none	742

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	19
2	EDHAE	Edhazardia aedis (strain USNM 41457)	22
3	VITCO	Vittaforma corneae (strain ATCC 50505)	22
4	TRYCI	Trypanosoma congolense (strain IL3000)	22
5	TRAHO	Trachipleistophora hominis	28
6	NEMP3	Nematocida parisii (strain ERTm3)	29
7	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	29
8	EIMMA	Eimeria maxima	32
9	SPRLO	Spraguea lophii (strain 42_110)	32
10	NOSCE	Nosema ceranae (strain BRL01)	32