Related genomes of genome PONDE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PONDE - Pontiella desulfatans

Proteome version: Refseq; Pontiella desulfatans F1 draft genome; GCA_900890425.1; 23-AUG-2020 with 6493 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CORAD	Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24)	925
2	PEDPL	Pedosphaera parvula (strain Ellin514)	838
3	OPITP	Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)	819
4	KLEP3	Klebsiella pneumoniae (strain 342)	746
5	KLEOK	Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686 / BUCSAV 143 / CCM 1901)	746
6	ECOH1	Escherichia coli O78:H11 (strain H10407 / ETEC)	736
7	ECOS5	Escherichia coli O150:H5 (strain SE15)	734
8	ECO81	Escherichia coli O81 (strain ED1a)	734
9	ECOLU	Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)	731
10	RHOBA	Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)	730

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	18
2	ENTBH	Enterocytozoon bieneusi (strain H348)	20
3	TRAHO	Trachipleistophora hominis	21
4	EDHAE	Edhazardia aedis (strain USNM 41457)	21
5	TRYCI	Trypanosoma congolense (strain IL3000)	22
6	NEMP3	Nematocida parisii (strain ERTm3)	25
7	SPRLO	Spraguea lophii (strain 42_110)	26
8	VAVCU	Vavraia culicis (isolate floridensis)	27
9	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	27
10	NOSCE	Nosema ceranae (strain BRL01)	28