Related genomes of genome PROA2 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PROA2 - Prosthecochloris aestuarii (strain DSM 271 / SK 413)

Proteome version: 14-OCT-2008 (Rel. 97, Last updated, Version 1) with 2319 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CHLPB	Chlorobium phaeobacteroides (strain BS1)	1493
2	CHLL2	Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)	1439
3	CHLPD	Chlorobium phaeobacteroides (strain DSM 266)	1375
4	CHLP8	Chlorobaculum parvum (strain DSM 263 / NCIMB 8327)	1335
5	CHLL3	Chlorobium luteolum (strain DSM 273 / BCRC 81028 / 2530)	1268
6	PELPB	Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)	1265
7	CHLTE	Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)	1261
8	CHLPM	Chlorobium phaeovibrioides (strain DSM 265 / 1930)	1233
9	CHLCH	Chlorobium chlorochromatii (strain CaD3)	1099
10	CHLT3	Chloroherpeton thalassium (strain ATCC 35110 / GB-78)	1007

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	16
2	TRYCI	Trypanosoma congolense (strain IL3000)	20
3	TRAHO	Trachipleistophora hominis	20
4	VITCO	Vittaforma corneae (strain ATCC 50505)	21
5	EDHAE	Edhazardia aedis (strain USNM 41457)	21
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	24
7	NEMP3	Nematocida parisii (strain ERTm3)	25
8	RALSL	Ralstonia solanacearum	27
9	VAVCU	Vavraia culicis (isolate floridensis)	28
10	MEGSC	Megaselia scalaris	28