Related genomes of genome PROM4 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PROM4 - Prochlorococcus marinus (strain MIT 9211)

Proteome version: 02-SEP-2008 (Rel. 95, Last updated, Version 3) with 1854 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PROMA	Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)	1479
2	PROMT	Prochlorococcus marinus (strain NATL2A)	1410
3	PROM1	Prochlorococcus marinus (strain NATL1A)	1402
4	PROMM	Prochlorococcus marinus (strain MIT 9313)	1355
5	PROM3	Prochlorococcus marinus (strain MIT 9303)	1350
6	SYNS3	Synechococcus sp. (strain CC9311)	1326
7	PARMW	Parasynechococcus marenigrum (strain WH8102)	1321
8	SYNPW	Synechococcus sp. (strain WH7803)	1320
9	SYNS9	Synechococcus sp. (strain CC9902)	1320
10	SYNSC	Synechococcus sp. (strain CC9605)	1319

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	7
2	TRAHO	Trachipleistophora hominis	15
3	VITCO	Vittaforma corneae (strain ATCC 50505)	17
4	NEMP3	Nematocida parisii (strain ERTm3)	17
5	EDHAE	Edhazardia aedis (strain USNM 41457)	18
6	VAVCU	Vavraia culicis (isolate floridensis)	19
7	TRYCI	Trypanosoma congolense (strain IL3000)	20
8	SPRLO	Spraguea lophii (strain 42_110)	20
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	20
10	NEMA1	Nematocida ausubeli (strain ATCC PRA-371 / ERTm2)	22