Related genomes of genome PYRAE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PYRAE - Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)

Proteome version: 01-SEP-2009 (Rel. 110, Last updated, Version 111) with 2600 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PYROT	Pyrobaculum oguniense (strain DSM 13380 / JCM 10595 / TE7)	1823
2	PYRAR	Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321 / PZ6)	1721
3	PYRCJ	Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)	1646
4	PYRNV	Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)	1481
5	PYRIL	Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)	1442
6	THEU7	Thermoproteus uzoniensis (strain 768-20)	1356
7	THETK	Thermoproteus tenax (strain ATCC 35583 / DSM 2078 / JCM 9277 / NBRC 100435 / Kra 1)	1318
8	VULDI	Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)	984
9	VULM7	Vulcanisaeta moutnovskia (strain 768-28)	907
10	CALMQ	Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167)	781

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	18
2	UC105	Patescibacteria group bacterium Baikal-deep-G193	19
3	RALSL	Ralstonia solanacearum	20
4	UC087	Candidatus Pacebacteria bacterium LF-bin-483	21
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	23
6	TRYCI	Trypanosoma congolense (strain IL3000)	23
7	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	25
8	UC062	bacterium Kalu_18-Q3-R12-55_BAT3C.2_fly	26
9	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	27
10	MYCSL	Mycoplasma suis (strain Illinois)	28