Related genomes of genome RHIME based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RHIME - Rhizobium meliloti (strain 1021)

Proteome version: 06-MAY-2008 (Rel. 95, Last updated, Version 5) with 6163 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SINMB	Sinorhizobium meliloti (strain BL225C)	5305
2	SINMM	Sinorhizobium meliloti (strain SM11)	5284
3	SINMK	Sinorhizobium meliloti (strain AK83)	5010
4	SINMW	Sinorhizobium medicae (strain WSM419)	4405
5	RHIFH	Rhizobium fredii (strain HH103)	3648
6	SINFN	Sinorhizobium fredii (strain NBRC 101917 / NGR234)	3631
7	RHIL3	Rhizobium leguminosarum bv. viciae (strain 3841)	3294
8	RHILS	Rhizobium leguminosarum bv. trifolii (strain WSM1325)	3275
9	RHILW	Rhizobium leguminosarum bv. trifolii (strain WSM2304)	3149
10	RHIEC	Rhizobium etli (strain CFN 42 / ATCC 51251)	3095

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	19
2	TRAHO	Trachipleistophora hominis	23
3	VITCO	Vittaforma corneae (strain ATCC 50505)	25
4	EDHAE	Edhazardia aedis (strain USNM 41457)	27
5	NOSCE	Nosema ceranae (strain BRL01)	29
6	NEMP3	Nematocida parisii (strain ERTm3)	30
7	VAVCU	Vavraia culicis (isolate floridensis)	32
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	33
9	TRYCI	Trypanosoma congolense (strain IL3000)	33
10	SPRLO	Spraguea lophii (strain 42_110)	33