Related genomes of genome STRRD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

STRRD - Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)

Proteome version: 25-MAY-2010 (Rel. 121, Last updated, Version 4) with 8926 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AMYMS	Amycolatopsis mediterranei (strain S699)	2839
2	STRBB	Streptomyces bingchenggensis (strain BCW-1)	2805
3	AMYMU	Amycolatopsis mediterranei (strain U-32)	2794
4	STRLN	Streptomyces lincolnensis	2774
5	STRDJ	Streptomyces davaonensis (strain DSM 101723 / JCM 4913 / KCC S-0913 / 768)	2644
6	STRVP	Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745)	2583
7	STRSW	Streptomyces scabiei (strain 87.22)	2564
8	STRCO	Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)	2551
9	CATAD	Catenulispora acidiphila (strain DSM 44928 / JCM 14897 / NBRC 102108 / NRRL B-24433 / ID139908)	2546
10	STRHJ	Streptomyces hygroscopicus subsp. jinggangensis (strain 5008)	2540

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	23
2	VITCO	Vittaforma corneae (strain ATCC 50505)	24
3	TRYCI	Trypanosoma congolense (strain IL3000)	27
4	EDHAE	Edhazardia aedis (strain USNM 41457)	29
5	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	31
6	NOSCE	Nosema ceranae (strain BRL01)	32
7	SPRLO	Spraguea lophii (strain 42_110)	33
8	TRAHO	Trachipleistophora hominis	34
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	35
10	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	35