Related genomes of genome THEA1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

THEA1 - Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1)

Proteome version: 23-NOV-2011 (Rel. 110, Last updated, Version 3) with 1812 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESTD	Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA)	1064
2	PERMH	Persephonella marina (strain DSM 14350 / EX-H1)	709
3	SULAA	Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825)	639
4	SULSY	Sulfurihydrogenibium sp. (strain YO3AOP1)	638
5	GEOUR	Geotalea uraniireducens (strain Rf4)	593
6	THET7	Thermosulfidibacter takaii (strain DSM 17441 / JCM 13301 / NBRC 103674 / ABI70S6)	581
7	THEAH	Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12)	577
8	AQUAE	Aquifex aeolicus (strain VF5)	577
9	GEOSK	Geobacter sulfurreducens (strain DL-1 / KN400)	569
10	GEOSL	Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)	565

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	7
2	VITCO	Vittaforma corneae (strain ATCC 50505)	9
3	TRAHO	Trachipleistophora hominis	11
4	EDHAE	Edhazardia aedis (strain USNM 41457)	12
5	NEMP3	Nematocida parisii (strain ERTm3)	13
6	TRYCI	Trypanosoma congolense (strain IL3000)	13
7	NOSCE	Nosema ceranae (strain BRL01)	13
8	SPRLO	Spraguea lophii (strain 42_110)	15
9	VAVCU	Vavraia culicis (isolate floridensis)	15
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	16