Related genomes of genome THEYD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

THEYD - Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)

Proteome version: 09-FEB-2010 (Rel. 117, Last updated, Version 15) with 1982 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	GEOUR	Geotalea uraniireducens (strain Rf4)	753
2	GEOSK	Geobacter sulfurreducens (strain DL-1 / KN400)	744
3	SYNFM	Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)	733
4	GEOSL	Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)	731
5	GEODF	Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32)	721
6	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	721
7	DESAL	Desulfatibacillum aliphaticivorans	720
8	TRIL1	Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)	719
9	U19DE	Deltaproteobacteria bacterium NC_groundwater_1540_Pr4_S-0.65um_55_10	718
10	GEOS8	Geobacter sp. (strain M18)	715

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	16
2	ENTBH	Enterocytozoon bieneusi (strain H348)	17
3	TRAHO	Trachipleistophora hominis	19
4	VITCO	Vittaforma corneae (strain ATCC 50505)	19
5	EDHAE	Edhazardia aedis (strain USNM 41457)	19
6	NOSCE	Nosema ceranae (strain BRL01)	23
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	23
8	NEMP3	Nematocida parisii (strain ERTm3)	23
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24
10	SPRLO	Spraguea lophii (strain 42_110)	26