Related genomes of genome TRAHO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRAHO - Trachipleistophora hominis

Proteome version: Ensembl Fungi 48; ASM31613v1 with 3212 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VAVCU	Vavraia culicis (isolate floridensis)	1655
2	SPRLO	Spraguea lophii (strain 42_110)	666
3	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	661
4	NOSCE	Nosema ceranae (strain BRL01)	548
5	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	531
6	EDHAE	Edhazardia aedis (strain USNM 41457)	526
7	VITCO	Vittaforma corneae (strain ATCC 50505)	522
8	NEMA1	Nematocida ausubeli (strain ATCC PRA-371 / ERTm2)	436
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	420
10	NEMP3	Nematocida parisii (strain ERTm3)	409

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	1
2	UC116	Patescibacteria group bacterium E44_bin74	5
3	ZINIC	Zinderia insecticola (strain CARI)	5
4	U06CH	Chloroflexi bacterium NC_groundwater_1535_Pr4_S-0.65um_62_11	8
5	UC053	Candidatus Omnitrophica bacterium BS750m-G34	8
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	8
7	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	8
8	SULMC	Sulcia muelleri (strain CARI)	9
9	U01GE	Gemmatimonadetes bacterium ARS69	9
10	ELUMP	Elusimicrobium minutum (strain Pei191)	9