Related genomes of genome TRYCC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRYCC - Trypanosoma cruzi (strain CL Brener)

Proteome version: Ensembl Protists 42; ASM20906v1; GCA_000209065.1 with 19607 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYRA	Trypanosoma rangeli	6745
2	TRYVY	Trypanosoma vivax (strain Y486)	4888
3	LEPPY	Leptomonas pyrrhocoris	4845
4	LEIMU	Leishmania mexicana (strain MHOM/GT/2001/U1103)	4652
5	LEIMA	Leishmania major strain Friedlin	4650
6	LEPSE	Leptomonas seymouri	4563
7	LEIIN	Leishmania infantum	4563
8	LEIDB	Leishmania donovani (strain BPK282A1)	4520
9	LEIBR	Leishmania braziliensis	4492
10	TRYB2	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	4441

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	13
2	UC116	Patescibacteria group bacterium E44_bin74	17
3	ZINIC	Zinderia insecticola (strain CARI)	26
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	28
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	28
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	28
7	UC008	Patescibacteria group bacterium Modern_marine.mb.211	29
8	SULMC	Sulcia muelleri (strain CARI)	30
9	UC087	Candidatus Pacebacteria bacterium LF-bin-483	31
10	MYCS3	Mycoplasma suis (strain KI_3806)	33