Related genomes of genome TRYRA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRYRA - Trypanosoma rangeli

Proteome version: Ensembl Protists 52; ASM371947v1 with 10104 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCC	Trypanosoma cruzi (strain CL Brener)	6745
2	LEPPY	Leptomonas pyrrhocoris	4249
3	LEIMU	Leishmania mexicana (strain MHOM/GT/2001/U1103)	4170
4	LEIMA	Leishmania major strain Friedlin	4168
5	LEIDB	Leishmania donovani (strain BPK282A1)	4113
6	LEIIN	Leishmania infantum	4109
7	LEPSE	Leptomonas seymouri	4109
8	TRYVY	Trypanosoma vivax (strain Y486)	4062
9	LEIBR	Leishmania braziliensis	4003
10	TRYB2	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	3864

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	7
2	UC116	Patescibacteria group bacterium E44_bin74	14
3	ZINIC	Zinderia insecticola (strain CARI)	22
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	22
5	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	25
6	SULMC	Sulcia muelleri (strain CARI)	27
7	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	27
8	UC105	Patescibacteria group bacterium Baikal-deep-G193	27
9	UC008	Patescibacteria group bacterium Modern_marine.mb.211	29
10	UC087	Candidatus Pacebacteria bacterium LF-bin-483	30