Related genomes of genome TRYVY based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRYVY - Trypanosoma vivax (strain Y486)

Proteome version: Refseq; TvIL_AH_1392; GCA_021307395.1; 28-DEC-2021 with 17806 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCC	Trypanosoma cruzi (strain CL Brener)	4888
2	TRYRA	Trypanosoma rangeli	4062
3	LEPPY	Leptomonas pyrrhocoris	3524
4	LEIMU	Leishmania mexicana (strain MHOM/GT/2001/U1103)	3383
5	LEIMA	Leishmania major strain Friedlin	3380
6	TRYB2	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	3364
7	LEIIN	Leishmania infantum	3300
8	LEPSE	Leptomonas seymouri	3281
9	LEIDB	Leishmania donovani (strain BPK282A1)	3281
10	LEIBR	Leishmania braziliensis	3264

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	8
2	UC116	Patescibacteria group bacterium E44_bin74	11
3	ZINIC	Zinderia insecticola (strain CARI)	17
4	UC105	Patescibacteria group bacterium Baikal-deep-G193	19
5	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	19
6	SULMC	Sulcia muelleri (strain CARI)	20
7	MYCSL	Mycoplasma suis (strain Illinois)	24
8	MYCS3	Mycoplasma suis (strain KI_3806)	24
9	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	24
10	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	24