Related genomes of genome TURPD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TURPD - Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H)

Proteome version: 09-JAN-2015 (Rel. 123, Last updated, Version 3) with 4091 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LEPBA	Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)	1044
2	LEPBP	Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)	1042
3	LEPII	Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain IPAV)	949
4	LEPIC	Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)	947
5	LEPIN	Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)	945
6	LEPBL	Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)	907
7	LEPBJ	Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)	894
8	U04SP	Spirochaetes bacterium Go_SlDig_bin_244	761
9	MYXXD	Myxococcus xanthus (strain DK1622)	685
10	MYXFH	Myxococcus fulvus (strain ATCC BAA-855 / HW-1)	674

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	16
2	ENTBH	Enterocytozoon bieneusi (strain H348)	17
3	TRAHO	Trachipleistophora hominis	18
4	EDHAE	Edhazardia aedis (strain USNM 41457)	19
5	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	22
6	TRYCI	Trypanosoma congolense (strain IL3000)	22
7	VAVCU	Vavraia culicis (isolate floridensis)	25
8	NOSCE	Nosema ceranae (strain BRL01)	25
9	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	26
10	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	27