Related genomes of genome U02AC based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U02AC - Actinobacteria bacterium MAG-41

Proteome version: Genbank; ASM1436068v1; GCA_014360685.1; 01-SEP-2020 with 2139 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U01AC	Actinobacteria bacterium CROMO_BS_222_8	556
2	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	461
3	DESAL	Desulfatibacillum aliphaticivorans	459
4	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	452
5	DESHD	Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)	428
6	DESMD	Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / KCTC 12902 / NCIMB 13706 / S10)	428
7	DESK7	Desulfofundulus kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)	421
8	DESHY	Desulfitobacterium hafniense (strain Y51)	421
9	CONWI	Conexibacter woesei (strain DSM 14684 / CIP 108061 / JCM 11494 / NBRC 100937 / ID131577)	420
10	DESAJ	Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4)	417

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	7
2	ENTBH	Enterocytozoon bieneusi (strain H348)	7
3	VITCO	Vittaforma corneae (strain ATCC 50505)	11
4	TRAHO	Trachipleistophora hominis	11
5	EDHAE	Edhazardia aedis (strain USNM 41457)	12
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	13
7	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	14
8	MEGSC	Megaselia scalaris	14
9	NOSCE	Nosema ceranae (strain BRL01)	15
10	NEMP3	Nematocida parisii (strain ERTm3)	16