Related genomes of genome U03MY based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U03MY - Myxococcales bacterium AS27yjCOA_30

Proteome version: Genbank; ASM1251732v1; GCA_012517325.1; 18-APR-2020 with 4247 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESAL	Desulfatibacillum aliphaticivorans	882
2	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	882
3	U02MY	Myxococcales bacterium SURF_8	861
4	U07DE	Deltaproteobacteria bacterium NC_groundwater_1649_Pr3_B-0.1um_64_26	834
5	U04MY	Myxococcales bacterium AS27yjCOA_137	797
6	U03DE	Deltaproteobacteria bacterium M_MaxBin.025	788
7	UC028	bacterium Zod_Metabat.886	787
8	ANASK	Anaeromyxobacter sp. (strain K)	783
9	UC036	Candidatus Zymogeniaceaea bacterium Zod_Metabat.1292	783
10	ANAD2	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	782

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	16
2	TRAHO	Trachipleistophora hominis	16
3	EDHAE	Edhazardia aedis (strain USNM 41457)	18
4	NEMP3	Nematocida parisii (strain ERTm3)	18
5	VITCO	Vittaforma corneae (strain ATCC 50505)	20
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	20
7	TRYCI	Trypanosoma congolense (strain IL3000)	22
8	VAVCU	Vavraia culicis (isolate floridensis)	22
9	NOSCE	Nosema ceranae (strain BRL01)	23
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	23