Related genomes of genome U03SP based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U03SP - Spirochaetes bacterium Zod_Metabat.958

Proteome version: Genbank; ASM1693426v1; GCA_016934265.1; 24-FEB-2021 with 3412 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC182	Candidatus Vecturithrix granuli none	942
2	SEDSS	Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228)	930
3	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	754
4	DESAL	Desulfatibacillum aliphaticivorans	752
5	U04SP	Spirochaetes bacterium Go_SlDig_bin_244	743
6	HYDET	Hydrogenispora ethanolica	722
7	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	701
8	TRECH	Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1)	692
9	SPITZ	Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203)	682
10	DESAH	Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2)	671

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	19
2	ENTBH	Enterocytozoon bieneusi (strain H348)	20
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	20
4	TRAHO	Trachipleistophora hominis	25
5	VITCO	Vittaforma corneae (strain ATCC 50505)	26
6	MEGSC	Megaselia scalaris	26
7	EDHAE	Edhazardia aedis (strain USNM 41457)	28
8	EIMMA	Eimeria maxima	31
9	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	32
10	NANST	Nanobsidianus stetteri	33