Related genomes of genome U04GE based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U04GE - Gemmatimonadetes bacterium SB0661_bin_27

Proteome version: Genbank; ASM984126v1; GCA_009841265.1; 09-JAN-2020 with 3116 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U03GE	Gemmatimonadetes bacterium RS821	1038
2	UC132	Candidatus Poribacteria bacterium PCPOR2b	1019
3	U08PL	Planctomycetes bacterium NC_groundwater_288_Ag_S-0.65um_63_14	785
4	UC183	Candidatus Entotheonella factor none	775
5	UC107	Calditrichaeota bacterium CLD2	720
6	KTERU	Ktedonosporobacter rubrisoli	677
7	BURL3	Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)	668
8	BURCC	Burkholderia cenocepacia (strain MC0-3)	667
9	BURCH	Burkholderia cenocepacia (strain HI2424)	663
10	PARPJ	Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)	648

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EDHAE	Edhazardia aedis (strain USNM 41457)	14
2	ENTBH	Enterocytozoon bieneusi (strain H348)	17
3	VITCO	Vittaforma corneae (strain ATCC 50505)	17
4	TRYCI	Trypanosoma congolense (strain IL3000)	18
5	TRAHO	Trachipleistophora hominis	18
6	NEMP3	Nematocida parisii (strain ERTm3)	21
7	NOSCE	Nosema ceranae (strain BRL01)	22
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	23
9	VAVCU	Vavraia culicis (isolate floridensis)	24
10	NEMA1	Nematocida ausubeli (strain ATCC PRA-371 / ERTm2)	24