Related genomes of genome UC003 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC003 - Abitibacteriaceae bacterium CP_BM_RX_R8_36

Proteome version: Genbank; ASM1923989v1; GCA_019239895.1; 15-JUL-2021 with 5295 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ARMRO	Armatimonas rosea	1159
2	U02AM	Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17	1017
3	FIMGI	Fimbriimonas ginsengisoli	940
4	CHTCT	Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)	865
5	PEDPL	Pedosphaera parvula (strain Ellin514)	815
6	U03AM	Armatimonadetes bacterium Ch1	811
7	U01AM	Armatimonadetes bacterium AS09scLD_344	805
8	SINAD	Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)	789
9	SOLUE	Solibacter usitatus (strain Ellin6076)	785
10	KTERU	Ktedonosporobacter rubrisoli	750

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	20
2	EDHAE	Edhazardia aedis (strain USNM 41457)	21
3	ENTBH	Enterocytozoon bieneusi (strain H348)	21
4	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	22
5	NEMP3	Nematocida parisii (strain ERTm3)	22
6	TRAHO	Trachipleistophora hominis	23
7	VAVCU	Vavraia culicis (isolate floridensis)	23
8	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	26
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	27
10	NOSCE	Nosema ceranae (strain BRL01)	27