Related genomes of genome UC008 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC008 - Patescibacteria group bacterium Modern_marine.mb.211

Proteome version: Genbank; ASM1881405v1; GCA_018814055.1; 09-JUN-2021 with 945 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	196
2	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	196
3	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	184
4	UC147	bacterium CG_4_10_14_0_2_um_filter_33_32	178
5	CLOLD	Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC)	174
6	ROSS1	Roseiflexus sp. (strain RS-1)	174
7	ROSCS	Roseiflexus castenholzii (strain DSM 13941 / HLO8)	172
8	NIACI	Niallia circulans	170
9	GEODF	Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32)	169
10	GEOUR	Geotalea uraniireducens (strain Rf4)	169

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	4
2	TRYCI	Trypanosoma congolense (strain IL3000)	6
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	8
4	MEGSC	Megaselia scalaris	10
5	EIMMA	Eimeria maxima	11
6	SYMMI	Symbiodinium microadriaticum	11
7	ENTNP	Entamoeba nuttalli (strain P19)	12
8	POSPM	Postia placenta (strain ATCC 44394 / Madison 698-R)	13
9	EDHAE	Edhazardia aedis (strain USNM 41457)	14
10	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	14