Related genomes of genome UC016 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC016 - Calditrichaeota bacterium SuakinDeep_MAG45_3

Proteome version: Genbank; ASM1826358v1; GCA_018263585.1; 04-MAY-2021 with 2153 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC109	candidate division LCP-89 bacterium B3_LCP	733
2	UC015	Calditrichaeota bacterium co234_bin30	713
3	CALAY	Caldithrix abyssi	579
4	UC107	Calditrichaeota bacterium CLD2	572
5	UC060	bacterium Aved_18-Q3-R54-62_MAXAC.418	569
6	UC051	bacterium BS750m-G18	566
7	UC142	bacterium BMS3Bbin03	541
8	IGNAJ	Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)	496
9	MELRP	Melioribacter roseus (strain JCM 17771 / P3M-2)	494
10	UC068	Ignavibacteriales bacterium NC_groundwater_1911_Pr3_S2p5_40_15	493

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EDHAE	Edhazardia aedis (strain USNM 41457)	11
2	ENTBH	Enterocytozoon bieneusi (strain H348)	12
3	RALSL	Ralstonia solanacearum	12
4	TRAHO	Trachipleistophora hominis	13
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	14
6	NEMP3	Nematocida parisii (strain ERTm3)	15
7	VITCO	Vittaforma corneae (strain ATCC 50505)	15
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	16
9	TRYCI	Trypanosoma congolense (strain IL3000)	16
10	NOSCE	Nosema ceranae (strain BRL01)	17