Related genomes of genome UC062 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC062 - bacterium Kalu_18-Q3-R12-55_BAT3C.2_fly

Proteome version: Genbank; ASM1669999v1; GCA_016699995.1; 19-JAN-2021 with 949 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	226
2	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	214
3	UC073	Candidatus Andersenbacteria bacterium NC_groundwater_813_Pr1_B-0.1um_46_36	207
4	UC147	bacterium CG_4_10_14_0_2_um_filter_33_32	202
5	NIACI	Niallia circulans	195
6	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	191
7	CLOBK	Clostridium botulinum (strain Okra / Type B1)	191
8	CLOBM	Clostridium botulinum (strain Loch Maree / Type A3)	191
9	BACC1	Bacillus cereus (strain ATCC 10987 / NRS 248)	190
10	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	189

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	3
2	MEGSC	Megaselia scalaris	7
3	TRYCI	Trypanosoma congolense (strain IL3000)	7
4	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	8
5	ENTNP	Entamoeba nuttalli (strain P19)	12
6	ENTIV	Entamoeba invadens IP1	12
7	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	13
8	ENTBH	Enterocytozoon bieneusi (strain H348)	13
9	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	13
10	NANGC	Nannochloropsis gaditana (strain CCMP526)	13