Related genomes of genome UC070 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC070 - Desulfobacterales bacterium NC_groundwater_1491_Pr4_B-0.1um_43_5

Proteome version: Genbank; ASM1620922v1; GCA_016209225.1; 21-DEC-2020 with 3045 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U19DE	Deltaproteobacteria bacterium NC_groundwater_1540_Pr4_S-0.65um_55_10	1019
2	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	1016
3	DESAL	Desulfatibacillum aliphaticivorans	1011
4	DESTA	Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1)	934
5	GEOUR	Geotalea uraniireducens (strain Rf4)	887
6	SYNFM	Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)	853
7	GEODF	Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32)	848
8	DESTT	Desulfobacula toluolica (strain DSM 7467 / Tol2)	836
9	GEOSM	Geobacter sp. (strain M21)	832
10	DESB2	Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / LMG 7858 / VKM B-1802 / 2st14)	829

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	15
2	TRYCI	Trypanosoma congolense (strain IL3000)	15
3	EDHAE	Edhazardia aedis (strain USNM 41457)	16
4	VITCO	Vittaforma corneae (strain ATCC 50505)	17
5	TRAHO	Trachipleistophora hominis	17
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	19
7	MEGSC	Megaselia scalaris	20
8	NEMP3	Nematocida parisii (strain ERTm3)	22
9	NOSCE	Nosema ceranae (strain BRL01)	23
10	VAVCU	Vavraia culicis (isolate floridensis)	23