Related genomes of genome UC074 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC074 - Candidatus Tectomicrobia bacterium NC_groundwater_717_Ag_S-0.2um_59_8

Proteome version: Genbank; ASM1619306v1; GCA_016193065.1; 21-DEC-2020 with 2918 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U18DE	Deltaproteobacteria bacterium NC_groundwater_360_Ag_B-0.1um_69_10	778
2	UC075	Candidatus Tectomicrobia bacterium NC_groundwater_748_Ag_S-0.65um_67_15	771
3	UC183	Candidatus Entotheonella factor none	646
4	UC014	Nitrospinaceae bacterium SI073_bin188	640
5	DESAL	Desulfatibacillum aliphaticivorans	625
6	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	625
7	UC186	Candidatus Methylomirabilis oxyfera none	624
8	U16DE	Deltaproteobacteria bacterium NC_groundwater_25_Pr7_B-0.1um_64_59	620
9	ANASK	Anaeromyxobacter sp. (strain K)	611
10	ANAD2	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	608

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	13
2	VITCO	Vittaforma corneae (strain ATCC 50505)	14
3	EDHAE	Edhazardia aedis (strain USNM 41457)	14
4	TRYCI	Trypanosoma congolense (strain IL3000)	15
5	NOSCE	Nosema ceranae (strain BRL01)	17
6	SPRLO	Spraguea lophii (strain 42_110)	18
7	NEMP3	Nematocida parisii (strain ERTm3)	18
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	19
9	TRAHO	Trachipleistophora hominis	19
10	VAVCU	Vavraia culicis (isolate floridensis)	20